MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-5731-P1a

Family name MIR-5731 (all species)
Seed UGGGCAC
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-5731
Paralogues Tur-Mir-5731-P1b  Tur-Mir-5731-P1c 
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587494.1: 1952-2039 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-5731-P1a)		 Mir-5731-P1a HE587494.1: 1952-2039 [-] Ensembl
Mir-5731-P1b HE587494.1: 6201-6288 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGGAAAUUUACGAAUGUACACUUGUUUUGACACAGCCUAGGAGCACAUGUAGCAGAAUAAAGAUUUUCAUAUUUUUUUCUGCAUAAAAAACUACAUGGGCACCUAGGCUAUGUCCAAUCAGGUGUAUCAGAAUCAUCAGAAAUCAU
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Structure
        10          20        30        40        50        60        70   
UCAGGAAAUUUACGAAU--|        U  U    C        A  A     AGCAGAAUAAAGAUUUUCAU 
                   GUACACUUG UU GACA AGCCUAGG GC CAUGU                    A
                   UAUGUGGAC AA CUGU UCGGAUCC CG GUACA                    U
UACUAAAGACUACUAAGAC^        U  C    A        A  G     UCAAAAAAUACGUCUUUUUU 
      140       130       120       110       100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Tur-Mir-5731-P1a_5p*
mirBase accessionMIMAT0023056
Sequence 
0- GACACAGCCUAGGAGCACAUGU -22
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Mature sequence

Tur-Mir-5731-P1a_3p
mirBase accessionMIMAT0023057
Sequence 
66- AUGGGCACCUAGGCUAUGUCCA -88
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