MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-5731-P1c

Family name MIR-5731 (all species)
Seed UGGGCAC
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-5731
Paralogues Tur-Mir-5731-P1a  Tur-Mir-5731-P1b 
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587301.1: 1420763-1420850 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-5731-P1c)		 Mir-5733 HE587301.1: 1416967-1417036 [-] Ensembl
Mir-5731-P1c HE587301.1: 1420763-1420850 [-] Ensembl
Mir-5734 HE587301.1: 1423018-1423077 [-] Ensembl
Mir-5736-v2 HE587301.1: 1424673-1424737 [-] Ensembl
Mir-5736-v1 HE587301.1: 1424674-1424736 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAGAAAUUUAAGAAUGUACACUUGUUUGGACACAGCCUAGGAGCACAUGUAGCAGAAUAAAGAUUUUCAUAUUUUUUUCUGCAUAAAAAACUACAUGGGCACCUAGGCUAUGUCCAAUCAGGUGUAUCAGAAUCAUCAGAAAUCAU
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Structure
        10          20        30        40        50        60        70   
UCAAGAAAUUUAAGAAU--|        U       C        A  A     AGCAGAAUAAAGAUUUUCAU 
                   GUACACUUG UUGGACA AGCCUAGG GC CAUGU                    A
                   UAUGUGGAC AACCUGU UCGGAUCC CG GUACA                    U
UACUAAAGACUACUAAGAC^        U       A        A  G     UCAAAAAAUACGUCUUUUUU 
      140       130       120       110       100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr
Star sequence

Tur-Mir-5731-P1c_5p*
mirBase accessionMIMAT0023056
Sequence 
0- GACACAGCCUAGGAGCACAUGU -22
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Mature sequence

Tur-Mir-5731-P1c_3p
mirBase accessionMIMAT0023057
Sequence 
66- AUGGGCACCUAGGCUAUGUCCA -88
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