Mir-5736-v1

MirGeneDB ID

Tur-Mir-5736-v1

Family name

MIR-5736 (all species)

Seed

UUCGCCA

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-5736a

Paralogues

Tur-Mir-5736-v2

Orthologues

Node of Origin (locus)

T. urticae

Node of Origin (family)

T. urticae

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587301.1: 1424674-1424736 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-5736-v1)

Mir-5733 HE587301.1: 1416967-1417036 [-] Ensembl
Mir-5731-P1c HE587301.1: 1420763-1420850 [-] Ensembl
Mir-5734 HE587301.1: 1423018-1423077 [-] Ensembl
Mir-5736-v2 HE587301.1: 1424673-1424737 [-] Ensembl
Mir-5736-v1 HE587301.1: 1424674-1424736 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCUUAUAAGUCAAUUAAUUUUAAAUACUUUUGCGGAGUAGACUGGUCAAAUGGGUCUUAAACAAUCAAUCAUUUCGCCAAUCUACUGCAAAGAAGUAUUCAAAAAUUGUAGAAAUUUCCUGGC

Get precursor sequence

Structure

        10          20        30          40        50        60 
CCUUAUAAGUCAAUUAA--    A        --|  GG      C    C      GUCUUAA 
                   UUUU AAUACUUU  UGC  AGUAGA UGGU AAAUGG       \
                   AAAA UUAUGAAG  ACG  UCAUCU ACCG UUUACU       A
CGGUCCUUUAAAGAUGUUA    C        AA^  --      A    C      AACUAAC 
 120       110       100        90          80        70