MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-5734

Family name MIR-5734 (all species)
Seed UGGGGUA
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-5734
Paralogues
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587301.1: 1423018-1423077 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-5734)
Mir-5733 HE587301.1: 1416967-1417036 [-] Ensembl
Mir-5731-P1c HE587301.1: 1420763-1420850 [-] Ensembl
Mir-5734 HE587301.1: 1423018-1423077 [-] Ensembl
Mir-5736-v2 HE587301.1: 1424673-1424737 [-] Ensembl
Mir-5736-v1 HE587301.1: 1424674-1424736 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGAUUUGGAAUUGAAGAUGCUUCAGAUUGCAUUGACUUCUAUCCGAAUGUAUCCCCUAUGAAAAUCAUUGGGGUAGAAGUCAGUAUAAUCUAAAGUUAUCAAUUAAUGCGUAUCAAUC
Get precursor sequence
Structure
        10         20         30        40        50         
AAGGAUUUGGAAUUGAA-   -|   C      C              G    UAUCCCC 
                  GAU GCUU AGAUUG AUUGACUUCUAUCC AAUG       U
                  CUA UGAA UCUAAU UGACUGAAGAUGGG UUAC       A
CUAACUAUGCGUAAUUAA   U^   A      A              G    UAAAAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Tur-Mir-5734_5p*

mirBase accessionMIMAT0023074
Sequence
0- GCAUUGACUUCUAUCCGAAUG -21
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Mature sequence

Tur-Mir-5734_3p

mirBase accessionMIMAT0023075
Sequence
39- UUGGGGUAGAAGUCAGUAUAA -60
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