MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-5733

Family name MIR-5733 (all species)
Seed ACUUGAU
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-5733
Paralogues
Orthologues
Node of Origin (locus) T. urticae
Node of Origin (family) T. urticae
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587301.1: 1416967-1417036 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-5733)		 Mir-5733 HE587301.1: 1416967-1417036 [-] Ensembl
Mir-5731-P1c HE587301.1: 1420763-1420850 [-] Ensembl
Mir-5734 HE587301.1: 1423018-1423077 [-] Ensembl
Mir-5736-v2 HE587301.1: 1424673-1424737 [-] Ensembl
Mir-5736-v1 HE587301.1: 1424674-1424736 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAAAAAAGUCAAGAGACUUUCGAAUGUACACUUGAUUGGACACAGUUUAGUUGCGAAUACAGCUGCUUGCGCGCCUAGGCUGUGUCCUAUUAAGUGUACAUUCGAAAGUCAGAAUCAUCAUAAAUCGU
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Structure
        10          20        30        40        50        60    
AUCAAAAAAGUCAAGAG--|                    U             UUGCGAAUACA 
                   ACUUUCGAAUGUACACUUGAU GGACACAGUUUAG           G
                   UGAAAGCUUACAUGUGAAUUA CCUGUGUCGGAUC           C
UGCUAAAUACUACUAAGAC^                    U             CGCGCGUUCGU 
.       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Tur-Mir-5733_5p
mirBase accessionMIMAT0023064
Sequence 
0- CACUUGAUUGGACACAGUUUAG -22
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Star sequence

Tur-Mir-5733_3p*
mirBase accessionMIMAT0023065
Sequence 
48- AGGCUGUGUCCUAUUAAGUGUA -70
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