Mir-34-P2c1

MirGeneDB ID

Xla-Mir-34-P2c1

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P1b Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mgi-Mir-34 Mom-Mir-34 Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Tca-Mir-34 Tur-Mir-34 War-Mir-34

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030736.1: 77170709-77170769 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAUGUCUGUCUGAACUGUGUUAGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAAAUCAAAUGUGCAAUCACUAGCUAAACUGCCAUCAAAACUCAACAUGAAAGUGCUGCAUGGAUA

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Structure

        10         20        30         40        50        60
ACAUGUCUGUCUGAACU-     AG     CA-|     G       C       GUUAAA 
                  GUGUU  GUUUU   GGCAGU UAGUUAG UGAUUGU      U
                  UACAA  CAAAA   CCGUCA AUCGAUC ACUAACG      C
AUAGGUACGUCGUGAAAG     CU     CUA^     A       -       UGUAAA 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Mature sequence

Xla-Mir-34-P2c1_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGU -23

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Star sequence

Xla-Mir-34-P2c1_3p*

mirBase accession

None

Sequence

39- AAUCACUAGCUAAACUGCCAUC -61

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