Mir-34-P1b

MirGeneDB ID

Xla-Mir-34-P1b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-34a

Paralogues

Xla-Mir-34-P1a Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xla-Mir-34-P2c1 Xla-Mir-34-P2c2 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cin-Mir-34 Cja-Mir-34-P1 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Eca-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gga-Mir-34-P1 Gja-Mir-34-P1 Gmo-Mir-34-P1 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P1 Isc-Mir-34 Laf-Mir-34-P1 Lch-Mir-34-P1 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P1 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mgi-Mir-34 Mml-Mir-34-P1 Mmr-Mir-34-P1 Mmu-Mir-34-P1 Mom-Mir-34 Mun-Mir-34-P1 Neu-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P1 Pau-Mir-34 Pbv-Mir-34-P1 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P1 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P1 Rph-Mir-34 Sha-Mir-34-P1 Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P1 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Tur-Mir-34 War-Mir-34 Xtr-Mir-34-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030737.1: 59143154-59143217 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCGUUUGUGCUGUCUGUGAGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGGAACAUUAGAAGUAGCAAUCAGCAAAUAUACUGCCCUAGAAGUUCUGCACAUUUGUAGCCAUGGAAAU

Get precursor sequence

Structure

        10         20         30        40        50        60 
GUGCGUUUGUGCUGUCU-   -| UG     UU        C  A          GUGGAAC 
                  GUG AG  UUUCU  GGCAGUGU UU GCUGGUUGUU       A
                  CAC UC  GAAGA  CCGUCAUA AA CGACUAACGA       U
UAAAGGUACCGAUGUUUA   G^ UU     UC        U  A          UGAAGAU 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-34-P1b_5p

mirBase accession

MIMAT0046584

Sequence

0- UGGCAGUGUCUUAGCUGGUUGUU -23

Get sequence

Star sequence

Xla-Mir-34-P1b_3p*

mirBase accession

MIMAT0046585

Sequence

41- CAAUCAGCAAAUAUACUGCCCUA -64

Get sequence