MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-34-P1

Family name MIR-34 (all species)
Seed GGCAGUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-34a
Paralogues Ami-Mir-34-P2a  Ami-Mir-34-P2b  Ami-Mir-34-P3a  Ami-Mir-34-P3b  Ami-Mir-34-P3c  Ami-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P1  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P1  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P1  Cin-Mir-34  Cja-Mir-34-P1  Cli-Mir-34-P1  Cmi-Mir-34-P1  Cpi-Mir-34-P1  Cpo-Mir-34-P1  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P1  Dpu-Mir-34  Dre-Mir-34-P1  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P1  Eca-Mir-34-P1  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P1  Gga-Mir-34-P1  Gja-Mir-34-P1  Gmo-Mir-34-P1  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P1  Isc-Mir-34  Laf-Mir-34-P1  Lch-Mir-34-P1  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P1  Mal-Mir-34-P1  Mdo-Mir-34-P1  Mgi-Mir-34  Mml-Mir-34-P1  Mmr-Mir-34-P1  Mmu-Mir-34-P1  Mom-Mir-34  Mun-Mir-34-P1  Neu-Mir-34-P1  Npo-Mir-34  Oan-Mir-34-P1  Obi-Mir-34  Ocu-Mir-34-P1  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P1  Pau-Mir-34  Pbv-Mir-34-P1  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P1  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P1  Rph-Mir-34  Sha-Mir-34-P1  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P1  Spu-Mir-34  Sto-Mir-34-P1  Tca-Mir-34  Tgu-Mir-34-P1  Tni-Mir-34-P1  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P1a  Xla-Mir-34-P1b  Xtr-Mir-34-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711487.1: 7835116-7835181 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUCAGUGGAUGCCAGCUGUGAGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAACAAUAGACAAGGAAGCAAUCAGCAAGUAUACUGCCCUAGAAGUGCUGCACAUUGUUGGGCCUGCAUCG
Get precursor sequence
Structure
        10         20         30         40        50        60  
AUCAGUGGAUGCCAGCU-   -  UG     UU        -|  A          GUGAACAA 
                  GUG AG  UUUCU  GGCAGUGU CUU GCUGGUUGUU        U
                  CAC UC  GAAGA  CCGUCAUA GAA CGACUAACGA        A
GCUACGUCCGGGUUGUUA   G  GU     UC        U^  -          AGGAACAG 
    120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-34-P1_5p
mirBase accessionMIMAT0038095
Sequence 
0- UGGCAGUGUCUUAGCUGGUUGUU -23
Get sequence
Star sequence

Ami-Mir-34-P1_3p* (predicted)
mirBase accessionMIMAT0038096
Sequence 
43- CAAUCAGCAAGUAUACUGCCCUA -66
Get sequence