MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-34-P3d

Family name MIR-34 (all species)
Seed GGCAGUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-449d
Paralogues Ami-Mir-34-P1  Ami-Mir-34-P2a  Ami-Mir-34-P2b  Ami-Mir-34-P3a  Ami-Mir-34-P3b  Ami-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017712138.1: 29164110-29164168 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-34-P3d)
Mir-34-P3d NW_017712138.1: 29164110-29164168 [-] UCSC
Mir-34-P3c NW_017712138.1: 29165345-29165403 [-] UCSC
Mir-34-P3b NW_017712138.1: 29165493-29165553 [-] UCSC
Mir-34-P3a NW_017712138.1: 29165972-29166036 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGGCUCAUAAUAGAUGUGUGUGUGAUGAUUAGGCAGUGUAUUGUUAGUUAGCUGGCAUUCACAUACCAGCAACUAAACACACUUCCACAUUAGCACACAACUUUGAAUCAGCAGUUACA
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Structure
        10            20         30        40        50        60
GGGCUCAUAAUAGAUGU----     -|    AUUA  C     AUUG      A    GCAUU 
                     GUGUG UGAUG    GG AGUGU    UUAGUU GCUG     C
                     CACAC AUUAC    CC UCACA    AAUCAA CGAC     A
ACAUUGACGACUAAGUUUCAA     G^    A---  U     CA--      -    CAUAC 
       110       100        90           80           70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Ami-Mir-34-P3d_5p

mirBase accessionMIMAT0038284
Sequence
0- AGGCAGUGUAUUGUUAGUUAGCUG -24
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Star sequence

Ami-Mir-34-P3d_3p* (predicted)

mirBase accessionNone
Sequence
38- GCAACUAAACACACUUCCACA -59
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