MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-34-P3d

Family name MIR-34 (all species)
Seed GGCAGUG
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-34-P1  Mal-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884708.1: 3842337-3842395 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUCAGCUAUUUUGUUGUGGGUGGUUGGUAGGCAGUGUCUUGUUAGCUGGCCGUUGCUGUGUGUGCCAGCCUACCUGCUGCUGCCCUCCAACUGUCCAUUUAAAUCCACACCACCAAC
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Structure
        10          20        30         40        50         
UUUUCAGCUAUUUUGUU--     UG     UA      -| CUU  UA      CGUUGC 
                   GUGGG  GUUGG  GGCAGU GU   GU  GCUGGC      \
                   UACCU  CAACC  CCGUCG CG   CA  CGACCG      U
CAACCACCACACCUAAAUU     GU     UC      U^ UC-  UC      UGUGUG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-34-P3d_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUCUUGUUAGCUGGC -22
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Star sequence

Mal-Mir-34-P3d_3p*
mirBase accessionNone
Sequence 
37- CAGCCUACCUGCUGCUGCCCUC -59
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