MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-34-P3d

Family name MIR-34 (all species)
Seed GGCAGUG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-449c
Paralogues Mdo-Mir-34-P1  Mdo-Mir-34-P2a  Mdo-Mir-34-P2b  Mdo-Mir-34-P3b  Mdo-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(monDom5_add)		 3: 17544591-17544650 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3d)		 Mir-34-P3d 3: 17544591-17544650 [-] UCSC Ensembl
Mir-34-P3c 3: 17545614-17545674 [-] UCSC Ensembl
Mir-34-P3b 3: 17545756-17545815 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUGGUUUUAGUGUUCACAUGUGGUGAUUGGGCAGUGUAUUGUUAGUUAGCUGUUUUUCAUAAGUGCAGCAACUGCAUACACUUCCAUAUUUCCAUAUGUUCUUUCAUCAGGCCAGUUU
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Structure
        10          20         30        40        50        60 
GCCUGGUUUUAGUGUUC--        U   -|   C       U  U    A   GUUUUUC 
                   ACAUGUGG GAU UGGG AGUGUAU GU AGUU GCU       \
                   UGUAUACC UUA ACCU UCACAUA CG UCAA CGA       A
UUUGACCGGACUACUUUCU        U   U^   -       -  -    -   CGUGAAU 
.       110       100        90         80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-34-P3d_5p
mirBase accessionMIMAT0028580
Sequence 
0- GGGCAGUGUAUUGUUAGUUAGCU -23
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Proposed targets TargetScanVert: mdo-miR-449c-5p
Star sequence

Mdo-Mir-34-P3d_3p*
mirBase accessionMIMAT0028581
Sequence 
39- GCAACUGCAUACACUUCCAUA -60
Get sequence
Proposed targets TargetScanVert: mdo-miR-449c-3p