MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-34-P3d

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3a  Xtr-Mir-34-P3b  Xtr-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3d  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr1: 178900526-178900583 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3d)		 Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAACAAAGUUUUUGUAUGUGUGGUGAUUAGGCAGUGUAUUGUUAGUUUGCUGUUGAAACUAACCAGCAACUACGUACACUACCACAUCAGCACAUGACUUUUCAUCUUGUCACAUA
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Structure
        10          20        30        40        50          
AUAAACAAAGUUUUUGUAU--|    G    UA  C       U  U    U    UUGAA 
                     GUGUG UGAU  GG AGUGUAU GU AGUU GCUG     \
                     UACAC ACUA  CC UCACAUG CA UCAA CGAC     A
AUACACUGUUCUACUUUUCAG^    G    CA  A       -  -    -    CAAUC 
      110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-34-P3d_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUUGUUAGUUUGCUGU -25
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Star sequence

Xtr-Mir-34-P3d_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAACUACGUACACUACCACA -58
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