MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-34-P2a2

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-34b-1
Paralogues Xtr-Mir-34-P1  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2b1  Xtr-Mir-34-P2b2  Xtr-Mir-34-P3a  Xtr-Mir-34-P3b  Xtr-Mir-34-P3c  Xtr-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cin-Mir-34  Cja-Mir-34-P2a  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Eca-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P2a  Isc-Mir-34  Laf-Mir-34-P2a  Lch-Mir-34-P2a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mgi-Mir-34  Mml-Mir-34-P2a  Mmr-Mir-34-P2a  Mmu-Mir-34-P2a  Mom-Mir-34  Mun-Mir-34-P2a  Neu-Mir-34-P2a-v1  Neu-Mir-34-P2a-v2  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P2a  Pau-Mir-34  Pbv-Mir-34-P2a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P2a  Rph-Mir-34  Sha-Mir-34-P2a  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b 
Node of Origin (locus) Xenopus
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr7: 75066361-75066422 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2a2)
Mir-34-P2a1 chr7: 75059640-75059700 [-] UCSC Ensembl
Mir-34-P2a2 chr7: 75066361-75066422 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCCUGCACCCGACUUAUGUUGGGUUUUCAGGCAGUGUAGUUAGCUGAUUGUGUUAACAUAAGACUUGCAAUCACUAGCUAAACUACCAGCAAAACUAAACAUGAAAGUACUGUCUGACGU
Get precursor sequence
Structure
        10         20        30         40        50        60 
CUCCCUGCACCCGACUU-     G      CA-| C   G       C       GUUAACA 
                  AUGUU GGUUUU   GG AGU UAGUUAG UGAUUGU       \
                  UACAA UCAAAA   CC UCA AUCGAUC ACUAACG       U
UGCAGUCUGUCAUGAAAG     A      CGA^ A   A       -       UUCAGAA 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-34-P2a2_5p

mirBase accessionMIMAT0003579
Sequence
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Proposed targets TargetScanVert: xtr-miR-34b
Star sequence

Xtr-Mir-34-P2a2_3p*

mirBase accessionNone
Sequence
40- AAUCACUAGCUAAACUACCAGC -62
Get sequence