Mir-34-P3c

MirGeneDB ID

Xtr-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-449a

Paralogues

Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2 Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2 Xtr-Mir-34-P3a Xtr-Mir-34-P3b Xtr-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr1: 178899884-178899944 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUUUCCCUAAAGAUCUGUGUUUAGAAGGAAGGCAGUGUAAUGUUAGCUGGUUGGAAAAUAGCAGACACUGGUUAACUUACACCUGCCCCCCUUCUUUACAUUAGUUCGUCGGUUGAUCUC

Get precursor sequence

Structure

        10          20        30         40        50          
GCUUUCCCUAAAGAUCU--    UU      AA    -|     U      UG  UGGAAAA 
                   GUGU  AGAAGG  GGCA GUGUAA GUUAGC  GU       \
                   UACA  UCUUCC  CCGU CACAUU CAAUUG  CA       U
CUCUAGUUGGCUGCUUGAU    UU      CC    C^     -      GU  CAGACGA 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-34-P3c_5p

mirBase accession

MIMAT0003704

Sequence

0- AGGCAGUGUAAUGUUAGCUGGU -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-449a-5p

Star sequence

Xtr-Mir-34-P3c_3p* (predicted)

mirBase accession

MIMAT0022716

Sequence

39- UGGUUAACUUACACCUGCCCCC -61

Get sequence

Proposed targets

TargetScanVert: xtr-miR-449a-3p