MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-34-P1  Cja-Mir-34-P2a  Cja-Mir-34-P2b  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3a-v2  Cja-Mir-34-P3b 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3c  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3c  Isc-Mir-34  Laf-Mir-34-P3c  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mgi-Mir-34  Mml-Mir-34-P3c  Mmr-Mir-34-P3c  Mmu-Mir-34-P3c  Mom-Mir-34  Neu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3c  Pau-Mir-34  Pbv-Mir-34-P3c  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3c  Rph-Mir-34  Sha-Mir-34-P3c  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021916.1: 151491366-151491427 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUGCAGUGGCUACCUGUGUGUGAUGAGCUGGCAGUGUAUUGUUAGCUGGUUGAAUAUGUGAAUGGCAUCAGCUAACAUGCAACUGCUGUCUUAUUGCAUAUACUAUGAACAUCAGCGUGU
Get precursor sequence
Structure
        10          20        30         40        50        60
AAAUGCAGUGGCUACCU--     UG     C      -|    U          UGAAUAU 
                   GUGUG  AUGAG UGGCAG UGUAU GUUAGCUGGU       G
                   UAUAC  UAUUC GUCGUC ACGUA CAAUCGACUA       U
UGUGCGACUACAAGUAUCA     GU     U      A^    -          CGGUAAG 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-34-P3c_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUAUUGUUAGCUGGU -22
Get sequence
Star sequence

Cja-Mir-34-P3c_3p*
mirBase accessionNone
Sequence 
40- CAGCUAACAUGCAACUGCUGUC -62
Get sequence