MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-34-P1  Sha-Mir-34-P2a  Sha-Mir-34-P2b  Sha-Mir-34-P3b  Sha-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cin-Mir-34  Cja-Mir-34-P3c  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3c  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3c  Isc-Mir-34  Laf-Mir-34-P3c  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mgi-Mir-34  Mml-Mir-34-P3c  Mmr-Mir-34-P3c  Mmu-Mir-34-P3c  Mom-Mir-34  Neu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3c  Pau-Mir-34  Pbv-Mir-34-P3c  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3c  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)		 GL841771.1: 107807-107867 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAGCCUUGCUUAUCUGGUUGUGAUGGGAUGGCAGUGUAUUGUUAGCUGGUUGAAUAUCUGAAUGCACCAGCUAACAUGCAACUGCUGUCCUAUUGCAUCUGCCACAUAGCAUAAAUUAA
Get precursor sequence
Structure
        10          20        30         40        50          
AAAAGCCUUGCUUAUCU--  U  UG            -|    U          UGAAUAU 
                   GG UG  AUGGGAUGGCAG UGUAU GUUAGCUGGU       \
                   UC AC  UAUCCUGUCGUC ACGUA CAAUCGACCA       C
AAUUAAAUACGAUACACCG  U  GU            A^    -          CGUAAGU 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-34-P3c_5p
mirBase accessionNone
Sequence 
0- UGGCAGUGUAUUGUUAGCUGGU -22
Get sequence
Star sequence

Sha-Mir-34-P3c_3p*
mirBase accessionNone
Sequence 
39- CAGCUAACAUGCAACUGCUGUC -61
Get sequence