Mir-34-P3c

MirGeneDB ID

Gga-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-449a

Paralogues

Gga-Mir-34-P1 Gga-Mir-34-P2a Gga-Mir-34-P2b Gga-Mir-34-P3a Gga-Mir-34-P3b Gga-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

Z: 16702892-16702949 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3c Z: 16702892-16702949 [-] UCSC Ensembl
Mir-34-P3b Z: 16703052-16703110 [-] UCSC Ensembl
Mir-34-P3a Z: 16704036-16704097 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCAGGGAGUGCCUCUGUGUGCGGUGGGGUGGCAGUGUAUGUUAGCUGGUUGAAACUCUUGACAUCAGCUAACACGCAGUUGCUAACCUGCUCCACAUACCUUUAGCAUCAAACUGG

Get precursor sequence

Structure

        10          20        30         40        50        
GUGCAGGGAGUGCCUCU--     C  UG  G      -| UA           UGAAAC 
                   GUGUG GG  GG UGGCAG UG  UGUUAGCUGGU      \
                   UACAC UC  CC AUCGUU AC  ACAAUCGACUA      U
GGUCAAACUACGAUUUCCA     C  GU  A      G^ GC           CAGUUC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-34-P3c_5p

mirBase accession

MIMAT0003372

Sequence

0- UGGCAGUGUAUGUUAGCUGGUU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-449a
miRDB: MIMAT0003372

Star sequence

Gga-Mir-34-P3c_3p*

mirBase accession

None

Sequence

35- UCAGCUAACACGCAGUUGCUAAC -58

Get sequence