Mir-34-P1

MirGeneDB ID

Gga-Mir-34-P1

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-34a

Paralogues

Gga-Mir-34-P2a Gga-Mir-34-P2b Gga-Mir-34-P3a Gga-Mir-34-P3b Gga-Mir-34-P3c Gga-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P1 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P1 Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P1 Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P1 Cin-Mir-34 Cja-Mir-34-P1 Cli-Mir-34-P1 Cmi-Mir-34-P1 Cpi-Mir-34-P1 Cpo-Mir-34-P1 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P1 Dpu-Mir-34 Dre-Mir-34-P1 Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P1 Eca-Mir-34-P1 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P1 Gja-Mir-34-P1 Gmo-Mir-34-P1 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P1 Isc-Mir-34 Laf-Mir-34-P1 Lch-Mir-34-P1 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P1 Mal-Mir-34-P1 Mdo-Mir-34-P1 Mgi-Mir-34 Mml-Mir-34-P1 Mmr-Mir-34-P1 Mmu-Mir-34-P1 Mom-Mir-34 Mun-Mir-34-P1 Neu-Mir-34-P1 Npo-Mir-34 Oan-Mir-34-P1 Obi-Mir-34 Ocu-Mir-34-P1 Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P1 Pau-Mir-34 Pbv-Mir-34-P1 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P1 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P1 Rph-Mir-34 Sha-Mir-34-P1 Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P1 Spu-Mir-34 Sto-Mir-34-P1 Tca-Mir-34 Tgu-Mir-34-P1 Tni-Mir-34-P1 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P1a Xla-Mir-34-P1b Xtr-Mir-34-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

21: 3272159-3272224 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUGCGUGAUGCCAGCUGUGAGUGUUUCUUUGGCAGUGUCUUAGCUGGUUGUUGUGAGCAAUAGUUAAGGAAGCAAUCAGCAAGUAUACUGCCCUAGAAGUGCUACACAUUGUUGGGCCUGCCUCA

Get precursor sequence

Structure

        10         20         30         40        50        60  
CUUGCGUGAUGCCAGCU-   -  UG     UU        -|  A          GUGAGCAA 
                  GUG AG  UUUCU  GGCAGUGU CUU GCUGGUUGUU        U
                  CAC UC  GAAGA  CCGUCAUA GAA CGACUAACGA        A
ACUCCGUCCGGGUUGUUA   A  GU     UC        U^  -          AGGAAUUG 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-34-P1_5p

mirBase accession

MIMAT0001173

Sequence

0- UGGCAGUGUCUUAGCUGGUUGUU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-34a-5p
miRDB: MIMAT0001173

Star sequence

Gga-Mir-34-P1_3p*

mirBase accession

MIMAT0026535

Sequence

43- CAAUCAGCAAGUAUACUGCCCUA -66

Get sequence

Proposed targets

TargetScanVert: gga-miR-34a-3p
miRDB: MIMAT0026535