MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-449b
Paralogues Gga-Mir-34-P1  Gga-Mir-34-P2a  Gga-Mir-34-P2b  Gga-Mir-34-P3a  Gga-Mir-34-P3c  Gga-Mir-34-P3d 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pbv-Mir-34-P3b  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
Z: 16703052-16703110 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3b)
Mir-34-P3c Z: 16702892-16702949 [-] UCSC Ensembl
Mir-34-P3b Z: 16703052-16703110 [-] UCSC Ensembl
Mir-34-P3a Z: 16704036-16704097 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUCACUCUGCACGGACCCUGUGGCUGGAAGGCAGUGUGCUGUUAGCGGCUGCUGUGCUGAAUGGAGCAGUCACUACCACACUGCCACCUGCUGCAGGGAUAGACUACUGCUGUUUGG
Get precursor sequence
Structure
        10          20        30        40        50        60 
AUCUCACUCUGCACGGA--|    UG  U  AA         CUGU   C       GUGCU 
                   CCCUG  GC GG  GGCAGUGUG    UAG GGCUGCU     \
                   GGGAC  CG CC  CCGUCACAC    AUC CUGACGA     G
GGUUUGUCGUCAUCAGAUA^    GU  U  A-         C---   A       GGUAA 
       110       100        90         80           70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-34-P3b_5p

mirBase accessionMIMAT0007743
Sequence
0- AGGCAGUGUGCUGUUAGCGGCUGCU -25
Get sequence
Proposed targets TargetScanVert: gga-miR-449b-5p
miRDB: MIMAT0007743
Star sequence

Gga-Mir-34-P3b_3p*

mirBase accessionMIMAT0007744
Sequence
38- CAGUCACUACCACACUGCCAC -59
Get sequence
Proposed targets TargetScanVert: gga-miR-449b-3p
miRDB: MIMAT0007744