MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-34-P1  Gja-Mir-34-P2a  Gja-Mir-34-P2b  Gja-Mir-34-P3a  Gja-Mir-34-P3c  Gja-Mir-34-P3d 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cja-Mir-34-P3b  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Laf-Mir-34-P3b  Lch-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3b  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sha-Mir-34-P3b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015173699.1: 555240-555301 [+]
Precursor
(pre-Mir +30nt flank)
GAUUUCAUACUUUUGCUGCCUGUGUCUGGUAGGCAGUGUAGAAUUAGCUGGCUGCUUUGCUUUGACUGCAGCAGUCACUACUACACUGUUACUCGCCGCAGGAGUGGUUCAUCGUCUGAACA
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Structure
        10          20        30        40        50        60   
GAUUUCAUACUUUUGCUG--|     UCU     G        AAU   C        UUGCUU 
                    CCUGUG   GGUAG CAGUGUAG   UAG UGGCUGCU      \
                    GGACGC   UCAUU GUCACAUC   AUC ACUGACGA      U
ACAAGUCUGCUACUUGGUGA^     CGC     -        ---   -        CGUCAG 
120       110       100        90            80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-34-P3b_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAGAAUUAGCUGGCUGCU -26
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Star sequence

Gja-Mir-34-P3b_3p* (predicted)
mirBase accessionNone
Sequence 
41- CAGUCACUACUACACUGUUAC -62
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