MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-34-P1  Laf-Mir-34-P2a  Laf-Mir-34-P2b  Laf-Mir-34-P3c 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cja-Mir-34-P3b  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3b  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sha-Mir-34-P3b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010034.1: 57230473-57230534 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGAAAAGGAGCGAUGACCUGAAUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUUGGGUCAAUUCAGCAGCCACGACUACGCUGCCACUUGCUUCCGGAUAAAUUCAUCUUGUUACUGA
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Structure
        10           20        30        40         50        60 
CAUGAAAAGGAGCGAUGA---| U   U     A         -    UA    G  GCUUUGG 
                     CC GAA CAGGU GGCAGUGUA UUGU  GCUG CU       \
                     GG CUU GUUCA CCGUCGCAU AGCA  CGAC GA       G
AGUCAUUGUUCUACUUAAAUA^ C   C     -         C    C-    -  CUUAACU 
120       110       100        90         80          70
Deep sequencing
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CommentThis is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-34-P3b_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUUGUUAGCUGGCU -23
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Star sequence

Laf-Mir-34-P3b_3p*
mirBase accessionNone
Sequence 
40- CAGCCACGACUACGCUGCCACU -62
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