| MirGeneDB ID | Laf-Mir-34-P3b |
|---|---|
| Family name | MIR-34 (all species) |
| Seed | GGCAGUG |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-34-P1 Laf-Mir-34-P2a Laf-Mir-34-P2b Laf-Mir-34-P3c |
| Orthologues | Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010034.1: 57230473-57230534 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAUGAAAAGGAGCGAUGACCUGAAUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUUGGGUCAAUUCAGCAGCCACGACUACGCUGCCACUUGCUUCCGGAUAAAUUCAUCUUGUUACUGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAUGAAAAGGAGCGAUGA---| U U A - UA G GCUUUGG CC GAA CAGGU GGCAGUGUA UUGU GCUG CU \ GG CUU GUUCA CCGUCGCAU AGCA CGAC GA G AGUCAUUGUUCUACUUAAAUA^ C C - C C- - CUUAACU 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | This is a Group 2 in human according to Kim et al but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-34-P3b_5p |
| mirBase accession | None |
| Sequence |
0- AGGCAGUGUAUUGUUAGCUGGCU -23
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|
| Star sequence | Laf-Mir-34-P3b_3p* |
| mirBase accession | None |
| Sequence |
40- CAGCCACGACUACGCUGCCACU -62
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|
