Mir-34-P3b

MirGeneDB ID

Loc-Mir-34-P3b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3a Loc-Mir-34-P3c Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Hsa-Mir-34-P3b Isc-Mir-34 Lch-Mir-34-P3b Lgi-Mir-34 Mdo-Mir-34-P3b Mml-Mir-34-P3b Mmu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ovu-Mir-34 Pbv-Mir-34-P3b Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3b Sha-Mir-34-P3b Sko-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Xbo-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG2: 5772422-5772481 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUCCUUCUGAAGACCUGUGUGCAGGUCAGAAGGCAGUGUAGCGUUAGCUGGUUGUAAACCUGUUACCAGCUCACAAUUCAACUGCUGUCUCACCGCGCAUUUGGAAGCAGCCAGUUCAAC

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Structure

        10            20        30        40         50        
AUCCUUCUGAAGACCUG----|    A   C   A      GUAGC-  U       UGUAA 
                     UGUGC GGU AGA GGCAGU      GU AGCUGGU     A
                     ACGCG CCA UCU UCGUCA      CA UCGACCA     C
CAACUUGACCGACGAAGGUUU^    -   C   G      ACUUAA  C       UUGUC 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P3b_5p

mirBase accession

None

Sequence

0- AGGCAGUGUAGCGUUAGCUGGU -22

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Star sequence

Loc-Mir-34-P3b_3p*

mirBase accession

None

Sequence

36- CAGCUCACAAUUCAACUGCUGUCU -60

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