Mir-34-P3a

MirGeneDB ID

Loc-Mir-34-P3a

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-34-P1 Loc-Mir-34-P2a Loc-Mir-34-P2b Loc-Mir-34-P3b Loc-Mir-34-P3c Loc-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Hsa-Mir-34-P3a-v1 Hsa-Mir-34-P3a-v2 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Mmu-Mir-34-P3a Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ovu-Mir-34 Pbv-Mir-34-P3a Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3a Sko-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Xbo-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(LepOcu1)

LG2: 5771825-5771881 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUGCAUUGCUCUCUGGACUGUAUCAGUGUGGCAGUGUACUGCUGCUGGCUGUUGUGUUUUUGACAGCUAUUGGCUACACUCCACCCUGCUGCAAUCAAUACCACCGCUCAACCCA

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Structure

        10          20        30        40        50         
UCCUGCAUUGCUCUCUG--| C    U   U    C      CU   GC        GUG 
                   GA UGUA CAG GUGG AGUGUA  GCU  UGGCUGUU   U
                   CU ACGU GUC CACC UCACAU  CGG  AUCGACAG   U
ACCCAACUCGCCACCAUAA^ A    C   C    -      --   UU        UUU 
     110       100        90         80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-34-P3a_5p

mirBase accession

None

Sequence

0- UGGCAGUGUACUGCUGCUGGCUGUU -25

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Star sequence

Loc-Mir-34-P3a_3p*

mirBase accession

None

Sequence

35- CAGCUAUUGGCUACACUCCACC -57

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