Mir-34-P3a

MirGeneDB ID

Rno-Mir-34-P3a

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-449c

Paralogues

Rno-Mir-34-P1 Rno-Mir-34-P2a Rno-Mir-34-P2b Rno-Mir-34-P3b Rno-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cja-Mir-34-P3a-v2 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Hsa-Mir-34-P3a-v2 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 44896085-44896147 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a)

Mir-34-P3a chr2: 44896085-44896147 [+] UCSC Ensembl
Mir-34-P3c chr2: 44897616-44897677 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUAGGGGACGAAGCGUGGGUGUGUCAGACAGGCAGUGCAUUGCUAGCUGGCUGUUAGAACUUCGUCCCAACAGUGGCUAGCUGCACUACCCUCUGCUGCACUUAGAAGCAUGCAAAGACGUG

Get precursor sequence

Structure

        10          20        30        40        50        60   
CAUAGGGGACGAAGCGU--|      U    CA  C      UU        G     AGAACU 
                   GGGUGUG CAGA  GG AGUGCA  GCUAGCUG CUGUU      \
                   UUCACGU GUCU  CC UCACGU  CGAUCGGU GACAA      U
GUGCAGAAACGUACGAAGA^      C    C-  A      --        -     CCCUGC 
 120       110       100         90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-34-P3a_5p

mirBase accession

MIMAT0017803

Sequence

0- AGGCAGUGCAUUGCUAGCUGGCUGUU -26

Get sequence

Proposed targets

TargetScanVert: rno-miR-449c-5p
miRDB: MIMAT0017803

Star sequence

Rno-Mir-34-P3a_3p*

mirBase accession

MIMAT0017804

Sequence

41- CAGUGGCUAGCUGCACUACCCU -63

Get sequence

Proposed targets

TargetScanVert: rno-miR-449c-3p
miRDB: MIMAT0017804