MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-34-P3a

Family name MIR-34 (all species)
Seed GGCAGUG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-449c
Paralogues Mmu-Mir-34-P1  Mmu-Mir-34-P2a  Mmu-Mir-34-P2b  Mmu-Mir-34-P3b  Mmu-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3a-v2  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mm10)		 chr13: 113036008-113036070 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)		 Mir-34-P3a chr13: 113036008-113036070 [+] UCSC Ensembl
Mir-34-P3b chr13: 113037429-113037487 [+] UCSC Ensembl
Mir-34-P3c chr13: 113037549-113037610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAGAGGAUGAAGUGUGGGUGUGUCAGGCAGGCAGUGCAUUGCUAGCUGGCUGUUAGAACUUUAUCCCAACAGUUGCUAGCUGCACUACCCUCUGCUGCACUCAGAAGCAUGCAAAGACGUG
Get precursor sequence
Structure
        10          20        30        40        50        60   
CACAGAGGAUGAAGUGU--|      U    CA  C      UU      U       AGAACU 
                   GGGUGUG CAGG  GG AGUGCA  GCUAGC GGCUGUU      \
                   CUCACGU GUCU  CC UCACGU  CGAUCG UUGACAA      U
GUGCAGAAACGUACGAAGA^      C    C-  A      --      -       CCCUAU 
 120       110       100         90          80         70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-34-P3a_5p
mirBase accessionMIMAT0003460
Sequence 
0- AGGCAGUGCAUUGCUAGCUGGCUGUU -26
Get sequence
Proposed targets microrna.org: MIMAT0003460
TargetScanVert: mmu-miR-449c-5p
miRDB: MIMAT0003460
Star sequence

Mmu-Mir-34-P3a_3p*
mirBase accessionMIMAT0022715
Sequence 
41- CAGUUGCUAGCUGCACUACCCU -63
Get sequence
Proposed targets TargetScanVert: mmu-miR-449c-3p
miRDB: MIMAT0022715