MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-34-P3a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Cow (Bos taurus)
MiRBase ID bta-mir-449c
Paralogues Bta-Mir-34-P1  Bta-Mir-34-P2a  Bta-Mir-34-P2b  Bta-Mir-34-P3b  Bta-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3a-v2  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gja-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037347.1: 23941721-23941783 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3a)
Mir-34-P3a NC_037347.1: 23941721-23941783 [+] UCSC Ensembl
Mir-34-P3b NC_037347.1: 23943207-23943267 [+] UCSC Ensembl
Mir-34-P3c NC_037347.1: 23943328-23943389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAAAAUGAAGCUUGAAUGUGUCAGGUAGGCAGUGCAUCUCUAGCUGGCUGUUAAAAUUUCUUUUUAACAGUUGCUAGUUGCACUCCCCUCUGUUGCAUUCAUAAUCUUGCCUUCCAAAG
Get precursor sequence
Structure
        10          20        30        40        50        60   
AAAAAAAAAUGAAGCUU--|      U    UA  C      UCU     U       AAAAUU 
                   GAAUGUG CAGG  GG AGUGCA   CUAGC GGCUGUU      \
                   CUUACGU GUCU  CC UCACGU   GAUCG UUGACAA      U
GAAACCUUCCGUUCUAAUA^      U    CC  -      U--     -       UUUUUC 
 120       110       100        90           80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-34-P3a_5p

mirBase accessionMIMAT0009322
Sequence
0- AGGCAGUGCAUCUCUAGCUGGCUGUU -26
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Proposed targets TargetScanVert: bta-miR-449c
Star sequence

Bta-Mir-34-P3a_3p*

mirBase accessionNone
Sequence
41- CAGUUGCUAGUUGCACUCCCCU -63
Get sequence