Mir-34-P3a

MirGeneDB ID

Aca-Mir-34-P3a

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-449b

Paralogues

Aca-Mir-34-P1 Aca-Mir-34-P2a Aca-Mir-34-P2b Aca-Mir-34-P3c Aca-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cja-Mir-34-P3a-v2 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3a-v1 Hsa-Mir-34-P3a-v2 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(anoCar2)

2: 2663692-2663757 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a)

Mir-34-P3a 2: 2663692-2663757 [+] UCSC Ensembl
Mir-34-P3c 2: 2665578-2665639 [+] UCSC Ensembl
Mir-34-P3d 2: 2666240-2666298 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUAAAAUGAAUAUGGGACUGUGUCGCUUUGGCAGUGCACUACUAGCUGGCUGUUGAGAUAUAUUCAUUUUUACAGUGGUUAGUUGCACUCCACACUGAUGCAGUCCAAAACACUGCAAGAGUAA

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Structure

        10          20        30        40        50        60    
AGAUAAAAUGAAUAUGG--|         CUU   C      CU        G    UGAGAUAU 
                   GACUGUGUCG   UGG AGUGCA  ACUAGCUG CUGU        A
                   CUGACGUAGU   ACC UCACGU  UGAUUGGU GACA        U
AAUGAGAACGUCACAAAAC^         CAC   -      --        -    UUUUUACU 
    120       110       100         90          80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-34-P3a_5p

mirBase accession

MIMAT0021959

Sequence

0- UGGCAGUGCACUACUAGCUGGCUGU -25

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Star sequence

Aca-Mir-34-P3a_3p*

mirBase accession

None

Sequence

45- AGUGGUUAGUUGCACUCCACA -66

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