Mir-34-P3a-v1

MirGeneDB ID

Hsa-Mir-34-P3a-v1

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-449c

Paralogues

Hsa-Mir-34-P1 Hsa-Mir-34-P2a Hsa-Mir-34-P2b Hsa-Mir-34-P3a-v2 Hsa-Mir-34-P3b Hsa-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3a Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3a Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3a-v1 Cja-Mir-34-P3a-v2 Cli-Mir-34-P3a Cmi-Mir-34-P3a Cpi-Mir-34-P3a Cpo-Mir-34-P3a Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3a Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3a Gja-Mir-34-P3a Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3a Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3a Mgi-Mir-34 Mmu-Mir-34-P3a Mom-Mir-34 Mun-Mir-34-P3a Npo-Mir-34 Oan-Mir-34-P3a Obi-Mir-34 Ocu-Mir-34-P3a Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3a Pau-Mir-34 Pbv-Mir-34-P3a Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3a Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Sto-Mir-34-P3a Tca-Mir-34 Tgu-Mir-34-P3a Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3a1 Xla-Mir-34-P3a2 Xtr-Mir-34-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr5: 55172279-55172336 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3a-v1)

Mir-34-P3c chr5: 55170546-55170607 [-] UCSC Ensembl
Mir-34-P3b chr5: 55170668-55170727 [-] UCSC Ensembl
Mir-34-P3a-v2 chr5: 55172278-55172337 [-] UCSC Ensembl
Mir-34-P3a-v1 chr5: 55172279-55172336 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAAAGGAUAAAGCUGGGAUGUGUCAGGUAGGCAGUGUAUUGCUAGCGGCUGUUAAUGAUUUUAACAGUUGCUAGUUGCACUCCUCUCUGUUGCAUUCAGAAGCACGCCCCCCAAAG

Get precursor sequence

Structure

        10          20        30        40        50          
AGCAAAGGAUAAAGCUG--|      U   GU   C      UU             AAUG 
                   GGAUGUG CAG  AGG AGUGUA  GCUAGCGGCUGUU    \
                   CUUACGU GUC  UCC UCACGU  UGAUCGUUGACAA    A
GAAACCCCCCGCACGAAGA^      U   UC   -      --             UUUU 
      110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-34-P3a-v1_5p

mirBase accession

MIMAT0010251

Sequence

0- AGGCAGUGUAUUGCUAGCGGCUGUU -25

Get sequence

Proposed targets

microrna.org: MIMAT0010251
TargetScanVert: hsa-miR-449c-5p
TargetMiner: hsa-miR-449c-5p
miRDB: MIMAT0010251

Star sequence

Hsa-Mir-34-P3a-v1_3p*

mirBase accession

MIMAT0013771

Sequence

36- CAGUUGCUAGUUGCACUCCUCU -58

Get sequence

Proposed targets

microrna.org: MIMAT0013771
TargetScanVert: hsa-miR-449c-3p
TargetMiner: hsa-miR-449c-3p
miRDB: MIMAT0013771