MirGeneDB ID | Cmi-Mir-34-P3a |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-34-P1
Cmi-Mir-34-P2a
Cmi-Mir-34-P2b
Cmi-Mir-34-P3b
Cmi-Mir-34-P3c
Cmi-Mir-34-P3d
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P3a
Ami-Mir-34-P3a
Asu-Mir-34
Bge-Mir-34
Bta-Mir-34-P3a
Cbr-Mir-34
Cel-Mir-34
Cgi-Mir-34
Cin-Mir-34
Cli-Mir-34-P3a
Cpi-Mir-34-P3a
Cpo-Mir-34-P3a
Cte-Mir-34
Dan-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dno-Mir-34-P3a
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gga-Mir-34-P3a
Gja-Mir-34-P3a
Hsa-Mir-34-P3a-v1
Hsa-Mir-34-P3a-v2
Isc-Mir-34
Lch-Mir-34-P3a
Lgi-Mir-34
Loc-Mir-34-P3a
Mmu-Mir-34-P3a
Mun-Mir-34-P3a
Npo-Mir-34
Oan-Mir-34-P3a
Obi-Mir-34
Ocu-Mir-34-P3a
Ovu-Mir-34
Pbv-Mir-34-P3a
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Rno-Mir-34-P3a
Sko-Mir-34
Spu-Mir-34
Sto-Mir-34-P3a
Tca-Mir-34
Tgu-Mir-34-P3a
Xbo-Mir-34
Xla-Mir-34-P3a1
Xla-Mir-34-P3a2
Xtr-Mir-34-P3a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635876.1: 5893708-5893771 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGAAGGAAGCAUGUAGGGAUGUGGUGGUUAGGCAGUGUACUGCUAGCUGGCUGUUGUGUCUGACAGGUUAGCAGCUGCUAGCUACACUCCACACUGCUGCAUCUGAGAGCACUUCAUCAUCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAGAAGGAAGCAUGUAG--| UG UG UA C CU U GUGUCU
GGAUG G GU GG AGUGUA GCUAGC GGCUGUU G
UCUAC C CA CC UCACAU CGAUCG UCGACGA A
GACUACUACUUCACGAGAG^ GU GU CA - -- - UUGGAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-34-P3a_5p |
mirBase accession | None |
Sequence |
0- AGGCAGUGUACUGCUAGCUGGCUGUU -26
Get sequence
|
Star sequence |
Cmi-Mir-34-P3a_3p* |
mirBase accession | None |
Sequence |
42- CAGCUGCUAGCUACACUCCACA -64
Get sequence
|