MirGeneDB ID | Cpo-Mir-34-P3a |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-449c
|
Paralogues |
Cpo-Mir-34-P1
Cpo-Mir-34-P2a
Cpo-Mir-34-P2b
Cpo-Mir-34-P3c
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P3a
Aga-Mir-34
Agr-Mir-34
Ami-Mir-34-P3a
Asu-Mir-34
Bge-Mir-34
Bta-Mir-34-P3a
Cbr-Mir-34
Cel-Mir-34
Cin-Mir-34
Cja-Mir-34-P3a-v1
Cja-Mir-34-P3a-v2
Cli-Mir-34-P3a
Cmi-Mir-34-P3a
Cpi-Mir-34-P3a
Cte-Mir-34
Dan-Mir-34
Dlo-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dno-Mir-34-P3a
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gga-Mir-34-P3a
Gja-Mir-34-P3a
Gpa-Mir-34
Gsp-Mir-34
Hmi-Mir-34
Hru-Mir-34
Hsa-Mir-34-P3a-v1
Hsa-Mir-34-P3a-v2
Isc-Mir-34
Lch-Mir-34-P3a
Lgi-Mir-34
Lhy-Mir-34
Llo-Mir-34
Loc-Mir-34-P3a
Mgi-Mir-34
Mmu-Mir-34-P3a
Mom-Mir-34
Mun-Mir-34-P3a
Npo-Mir-34
Oan-Mir-34-P3a
Obi-Mir-34
Ocu-Mir-34-P3a
Ofu-Mir-34
Ovu-Mir-34
Pab-Mir-34-P3a
Pau-Mir-34
Pbv-Mir-34-P3a
Pca-Mir-34
Pdu-Mir-34
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Pve-Mir-34
Rno-Mir-34-P3a
Rph-Mir-34
Sko-Mir-34
Snu-Mir-34
Spu-Mir-34
Sto-Mir-34-P3a
Tca-Mir-34
Tgu-Mir-34-P3a
Tur-Mir-34
War-Mir-34
Xla-Mir-34-P3a1
Xla-Mir-34-P3a2
Xtr-Mir-34-P3a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (cavPor3) |
scaffold_29: 6899940-6900004 [+]
UCSC
|
Clustered miRNAs (< 50kb from Mir-34-P3a) |
Mir-34-P3a
scaffold_29: 6899940-6900004 [+]
UCSC
Mir-34-P3c
scaffold_29: 6900585-6900645 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) | AGCAAAAGGUGAAACUUGGAUGUGACAGAUAGGCAGUGCAUUGCUAGCUGGCUGUUAAGAUUUUUCAUUUUAGCAGUUGCUAGUUGCACUCCUCUCUGUUGCAAUCAGAAGCGUGCUACCCAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCAAAAGGUGAAACUU--| A UG U C UU U AAGAUUU
GG UG ACAGA AGG AGUGCA GCUAGC GGCUGUU \
CU AC UGUCU UCC UCACGU UGAUCG UUGACGA U
GUAACCCAUCGUGCGAAGA^ A GU C - -- - UUUUACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
|
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Mature sequence |
Cpo-Mir-34-P3a_5p |
mirBase accession | MIMAT0047259 |
Sequence |
0- AGGCAGUGCAUUGCUAGCUGGCUGUU -26
Get sequence
|
Star sequence |
Cpo-Mir-34-P3a_3p* |
mirBase accession | MIMAT0047260 |
Sequence |
43- CAGUUGCUAGUUGCACUCCUCU -65
Get sequence
|