MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-34-P3a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-34-P1  Gja-Mir-34-P2a  Gja-Mir-34-P2b  Gja-Mir-34-P3b  Gja-Mir-34-P3c  Gja-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3a  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3a  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cja-Mir-34-P3a-v1  Cja-Mir-34-P3a-v2  Cli-Mir-34-P3a  Cmi-Mir-34-P3a  Cpi-Mir-34-P3a  Cpo-Mir-34-P3a  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3a  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3a  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3a-v1  Hsa-Mir-34-P3a-v2  Isc-Mir-34  Lch-Mir-34-P3a  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3a  Mgi-Mir-34  Mmu-Mir-34-P3a  Mom-Mir-34  Mun-Mir-34-P3a  Npo-Mir-34  Oan-Mir-34-P3a  Obi-Mir-34  Ocu-Mir-34-P3a  Ofu-Mir-34  Ovu-Mir-34  Pab-Mir-34-P3a  Pau-Mir-34  Pbv-Mir-34-P3a  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3a  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Sto-Mir-34-P3a  Tca-Mir-34  Tgu-Mir-34-P3a  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3a1  Xla-Mir-34-P3a2  Xtr-Mir-34-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015173699.1: 554751-554807 [+]
Precursor
(pre-Mir +30nt flank)
ACUGAAAGUGAGCCCAGGAAUGUGUCACUUUGGCAGUGCCGUACUAGCUGGCUGUUUGGGUAUAACAGUCUCUAGCUGCACUCCACAGUGCGACAUCCCAUACUGGUCAAAAAGUAA
Get precursor sequence
Structure
        10          20        30        40        50          
ACUGAAAGUGAGCCCAGGA--|   GU    U   C     CGUA    CU      UUGG 
                     AUGU  CACU UGG AGUGC    CUAG  GGCUGU    \
                     UACA  GUGA ACC UCACG    GAUC  CUGACA    G
AAUGAAAAACUGGUCAUACCC^   GC    C   -     UC--    U-      AUAU 
     110       100        90         80           70
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-34-P3a_5p (predicted)
mirBase accessionNone
Sequence 
0- UGGCAGUGCCGUACUAGCUGGCUGU -25
Get sequence
Star sequence

Gja-Mir-34-P3a_3p* (predicted)
mirBase accessionNone
Sequence 
36- AGUCUCUAGCUGCACUCCACA -57
Get sequence