MirGeneDB ID | Gga-Mir-34-P3a |
Family name |
MIR-34 (all species) |
Seed |
GGCAGUG |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-449c
|
Paralogues |
Gga-Mir-34-P1
Gga-Mir-34-P2a
Gga-Mir-34-P2b
Gga-Mir-34-P3b
Gga-Mir-34-P3c
Gga-Mir-34-P3d
|
Orthologues |
Aae-Mir-34
Aca-Mir-34-P3a
Aga-Mir-34
Agr-Mir-34
Ami-Mir-34-P3a
Asu-Mir-34
Bge-Mir-34
Bta-Mir-34-P3a
Cbr-Mir-34
Cel-Mir-34
Cin-Mir-34
Cja-Mir-34-P3a-v1
Cja-Mir-34-P3a-v2
Cli-Mir-34-P3a
Cmi-Mir-34-P3a
Cpi-Mir-34-P3a
Cpo-Mir-34-P3a
Cte-Mir-34
Dan-Mir-34
Dlo-Mir-34
Dma-Mir-34
Dme-Mir-34
Dmo-Mir-34
Dno-Mir-34-P3a
Dpu-Mir-34
Dsi-Mir-34
Dya-Mir-34
Efe-Mir-34
Esc-Mir-34
Gja-Mir-34-P3a
Gpa-Mir-34
Gsp-Mir-34
Hmi-Mir-34
Hru-Mir-34
Hsa-Mir-34-P3a-v1
Hsa-Mir-34-P3a-v2
Isc-Mir-34
Lch-Mir-34-P3a
Lgi-Mir-34
Lhy-Mir-34
Llo-Mir-34
Loc-Mir-34-P3a
Mgi-Mir-34
Mmu-Mir-34-P3a
Mom-Mir-34
Mun-Mir-34-P3a
Npo-Mir-34
Oan-Mir-34-P3a
Obi-Mir-34
Ocu-Mir-34-P3a
Ofu-Mir-34
Ovu-Mir-34
Pab-Mir-34-P3a
Pau-Mir-34
Pbv-Mir-34-P3a
Pca-Mir-34
Pdu-Mir-34
Pfl-Mir-34
Pma-Mir-34-P3
Pmi-Mir-34
Pve-Mir-34
Rno-Mir-34-P3a
Rph-Mir-34
Sko-Mir-34
Snu-Mir-34
Spu-Mir-34
Sto-Mir-34-P3a
Tca-Mir-34
Tgu-Mir-34-P3a
Tur-Mir-34
War-Mir-34
Xla-Mir-34-P3a1
Xla-Mir-34-P3a2
Xtr-Mir-34-P3a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
Z: 16704036-16704097 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-34-P3a) |
Mir-34-P3c
Z: 16702892-16702949 [-]
UCSC
Ensembl
Mir-34-P3b
Z: 16703052-16703110 [-]
UCSC
Ensembl
Mir-34-P3a
Z: 16704036-16704097 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) | GCAGCUGAGACGGAGUGGAACGCUGUGGUCUGGCAGUGCGUGUUAGCUGGCUGUUGUCCCAAGGUACCAACAGCUGCUCACGGCACUCCAGACUGCCACGCUCAAGAGCAUUGUGGAAAGGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCAGCUGAGACGGAGUG--| A CU UG C G U U GUCCCA
GA CG G GUCUGG AGUGC UGU AGC GGCUGUU \
CU GC C CAGACC UCACG GCA UCG UCGACAA A
CGGAAAGGUGUUACGAGAA^ C AC GU - - C - CCAUGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Mir-34-P3a_5p |
mirBase accession | MIMAT0007602 |
Sequence |
0- UGGCAGUGCGUGUUAGCUGGCUGUU -25
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-449c-5p
miRDB: MIMAT0007602
|
Star sequence |
Gga-Mir-34-P3a_3p* |
mirBase accession | MIMAT0007603 |
Sequence |
40- CAGCUGCUCACGGCACUCCAGA -62
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-449c-3p
miRDB: MIMAT0007603
|