Mir-34-P2b

MirGeneDB ID

Gga-Mir-34-P2b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-34c

Paralogues

Gga-Mir-34-P1 Gga-Mir-34-P2a Gga-Mir-34-P3a Gga-Mir-34-P3b Gga-Mir-34-P3c Gga-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cin-Mir-34 Cja-Mir-34-P2b Cli-Mir-34-P2b Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Eca-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gja-Mir-34-P2b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P2b Isc-Mir-34 Laf-Mir-34-P2b Lch-Mir-34-P2b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mgi-Mir-34 Mml-Mir-34-P2b Mmr-Mir-34-P2b Mmu-Mir-34-P2b Mom-Mir-34 Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P2b Pau-Mir-34 Pbv-Mir-34-P2b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P2b Rph-Mir-34 Sha-Mir-34-P2b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Tur-Mir-34 War-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

24: 5569588-5569642 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2a 24: 5568852-5568910 [+] UCSC Ensembl
Mir-34-P2b 24: 5569588-5569642 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGAGGAGUUCAUCCAUCAGCCUGGUUACCAGGCAGUGUAGUUAGCUGAUUGCCACCAGGACCAAUCACUAACCACACAGCCAGGUAAAAAGGCUGGGGAGAAAGCCCAGUGGGA

Get precursor sequence

Structure

        10          20        30        40        50       
GGGAGGAGUUCAUCCAU--|     GG     A   A    A     C      CCAC 
                   CAGCCU  UUACC GGC GUGU GUUAG UGAUUG    C
                   GUCGGA  AAUGG CCG CACA CAAUC ACUAAC    A
AGGGUGACCCGAAAGAGGG^     AA     A   A    C     -      CAGG 
   110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-34-P2b_5p

mirBase accession

MIMAT0001180

Sequence

0- AGGCAGUGUAGUUAGCUGAUUGC -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-34c-5p
miRDB: MIMAT0001180

Star sequence

Gga-Mir-34-P2b_3p*

mirBase accession

MIMAT0026541

Sequence

33- AAUCACUAACCACACAGCCAGG -55

Get sequence

Proposed targets

TargetScanVert: gga-miR-34c-3p
miRDB: MIMAT0026541