Mir-34-P2b

MirGeneDB ID

Cli-Mir-34-P2b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-34c

Paralogues

Cli-Mir-34-P1 Cli-Mir-34-P2a Cli-Mir-34-P3a Cli-Mir-34-P3b Cli-Mir-34-P3c Cli-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2b Ami-Mir-34-P2b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2b Cgi-Mir-34 Cin-Mir-34 Cmi-Mir-34-P2b Cpi-Mir-34-P2b Cpo-Mir-34-P2b Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2b Dpu-Mir-34 Dre-Mir-34-P2b Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2b Gga-Mir-34-P2b Gja-Mir-34-P2b Hsa-Mir-34-P2b Isc-Mir-34 Lch-Mir-34-P2b Lgi-Mir-34 Loc-Mir-34-P2b Mdo-Mir-34-P2b Mml-Mir-34-P2b Mmu-Mir-34-P2b Mun-Mir-34-P2b Npo-Mir-34 Oan-Mir-34-P2b Obi-Mir-34 Ocu-Mir-34-P2b Ovu-Mir-34 Pbv-Mir-34-P2b Pfl-Mir-34 Pmi-Mir-34 Rno-Mir-34-P2b Sha-Mir-34-P2b Sko-Mir-34 Spt-Mir-34-P2b Spu-Mir-34 Sto-Mir-34-P2b Tca-Mir-34 Tgu-Mir-34-P2b Xbo-Mir-34 Xla-Mir-34-P2b1a Xla-Mir-34-P2b1b Xla-Mir-34-P2b2a Xla-Mir-34-P2b2b Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold77: 2057489-2057543 [+]

Clustered miRNAs
(< 50kb from Mir-34-P2b)

Mir-34-P2a scaffold77: 2057114-2057172 [+]
Mir-34-P2b scaffold77: 2057489-2057543 [+]

Precursor
(pre-Mir +30nt flank)

AAAGGGAACUCUCACAUCAGCCUAGUUACUAGGCAGUGUAGUUAGCUGAUUGCCAAAAGUACCAAUCACUAGCCACACAGCCAGGUAAAAAGGCUUGGAAGAUAUCUCAAUGGAG

Get precursor sequence

Structure

        10          20        30        40        50       
AAAGGGAACUCUCACAUC--|    AG     A   A    A     C      CCAA 
                    AGCCU  UUACU GGC GUGU GUUAG UGAUUG    A
                    UCGGA  AAUGG CCG CACA CGAUC ACUAAC    A
GAGGUAACUCUAUAGAAGGU^    AA     A   A    C     -      CAUG 
   110       100        90        80        70         60