Mir-34-P2a

MirGeneDB ID

Cli-Mir-34-P2a

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-34b

Paralogues

Cli-Mir-34-P1 Cli-Mir-34-P2b Cli-Mir-34-P3a Cli-Mir-34-P3b Cli-Mir-34-P3c Cli-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P2a Ami-Mir-34-P2a Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P2a Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P2a Cgi-Mir-34 Cin-Mir-34 Cmi-Mir-34-P2a Cpi-Mir-34-P2a Cpo-Mir-34-P2a Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P2a Dpu-Mir-34 Dre-Mir-34-P2a Dsi-Mir-34 Dya-Mir-34 Ebu-Mir-34-P2a Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P2a Gga-Mir-34-P2a Gja-Mir-34-P2a Hsa-Mir-34-P2a Isc-Mir-34 Lch-Mir-34-P2a Lgi-Mir-34 Loc-Mir-34-P2a Mdo-Mir-34-P2a Mml-Mir-34-P2a Mmu-Mir-34-P2a Mun-Mir-34-P2a Npo-Mir-34 Oan-Mir-34-P2a Obi-Mir-34 Ocu-Mir-34-P2a Ovu-Mir-34 Pbv-Mir-34-P2a Pfl-Mir-34 Pmi-Mir-34 Rno-Mir-34-P2a Sha-Mir-34-P2a Sko-Mir-34 Spt-Mir-34-P2a Spu-Mir-34 Sto-Mir-34-P2a Tca-Mir-34 Tgu-Mir-34-P2a Xbo-Mir-34 Xla-Mir-34-P2a1a Xla-Mir-34-P2a1b Xla-Mir-34-P2a2a Xla-Mir-34-P2a2b Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold77: 2057114-2057172 [+]

Clustered miRNAs
(< 50kb from Mir-34-P2a)

Mir-34-P2a scaffold77: 2057114-2057172 [+]
Mir-34-P2b scaffold77: 2057489-2057543 [+]

Precursor
(pre-Mir +30nt flank)

ACCCCAUCACAAGAGUGGUGCUUGGUUUGUAGGCAGUGUAGUUAGCUGAUUGUAACCACUGCUCCGCAAUCACUACACUCACUGCCAUCAAAACAAGGCACAGGAUUCCCUGCUGCAAC

Get precursor sequence

Structure

        10         20         30        40         50         
ACCCCAUCACAAGAGUG-      GG-|   UA       U   -   C       AACCA 
                  GUGCUU   UUUG  GGCAGUG AGU UAG UGAUUGU     C
                  CACGGA   AAAC  CCGUCAC UCA AUC ACUAACG     U
CAACGUCGUCCCUUAGGA      ACA^   UA       -   C   -       CCUCG 
       110       100        90        80          70        60