MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-34-P2a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-34b
Paralogues Cpi-Mir-34-P1  Cpi-Mir-34-P2b  Cpi-Mir-34-P3a  Cpi-Mir-34-P3b  Cpi-Mir-34-P3c  Cpi-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Hsa-Mir-34-P2a  Isc-Mir-34  Lch-Mir-34-P2a  Lgi-Mir-34  Loc-Mir-34-P2a  Mdo-Mir-34-P2a  Mml-Mir-34-P2a  Mmu-Mir-34-P2a  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ovu-Mir-34  Pbv-Mir-34-P2a  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2a  Sha-Mir-34-P2a  Sko-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Xbo-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584584: 2150943-2151001 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P2a)
Mir-34-P2b JH584584: 2150231-2150284 [-] UCSC Ensembl
Mir-34-P2a JH584584: 2150943-2151001 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUCCUCACAGAAGUAGUGUUUGGUUUGUAGGCAGUGUAGUUAGCUGAUUGUAUCCAUCUCUUUGCAAUCACUAACUUUACUGCCAUCAAAACAAGACACAGAAUUCCCGGCUACAGC
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Structure
        10         20         30        40        50         
CUCUCCUCACAGAAGUA-      GG-|   UA       U      C       AUCCA 
                  GUGUUU   UUUG  GGCAGUG AGUUAG UGAUUGU     U
                  CACAGA   AAAC  CCGUCAU UCAAUC ACUAACG     C
CGACAUCGGCCCUUAAGA      ACA^   UA       U      -       UUUCU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-34-P2a_5p

mirBase accessionMIMAT0037694
Sequence
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Star sequence

Cpi-Mir-34-P2a_3p*

mirBase accessionMIMAT0037695
Sequence
37- AAUCACUAACUUUACUGCCAUC -59
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