MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-34-P2a

Family name MIR-34 (all species)
Seed GGCAGUG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-34-P1  Loc-Mir-34-P2b  Loc-Mir-34-P3a  Loc-Mir-34-P3b  Loc-Mir-34-P3c  Loc-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P2a  Ami-Mir-34-P2a  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P2a  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P2a  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P2a  Cmi-Mir-34-P2a  Cpi-Mir-34-P2a  Cpo-Mir-34-P2a  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P2a  Dpu-Mir-34  Dre-Mir-34-P2a  Dsi-Mir-34  Dya-Mir-34  Ebu-Mir-34-P2a  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P2a  Gga-Mir-34-P2a  Gja-Mir-34-P2a  Hsa-Mir-34-P2a  Isc-Mir-34  Lch-Mir-34-P2a  Lgi-Mir-34  Mdo-Mir-34-P2a  Mml-Mir-34-P2a  Mmu-Mir-34-P2a  Mun-Mir-34-P2a  Npo-Mir-34  Oan-Mir-34-P2a  Obi-Mir-34  Ocu-Mir-34-P2a  Ovu-Mir-34  Pbv-Mir-34-P2a  Pfl-Mir-34  Pmi-Mir-34  Rno-Mir-34-P2a  Sha-Mir-34-P2a  Sko-Mir-34  Spt-Mir-34-P2a  Spu-Mir-34  Sto-Mir-34-P2a  Tca-Mir-34  Tgu-Mir-34-P2a  Xbo-Mir-34  Xla-Mir-34-P2a1a  Xla-Mir-34-P2a1b  Xla-Mir-34-P2a2a  Xla-Mir-34-P2a2b  Xtr-Mir-34-P2a1  Xtr-Mir-34-P2a2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG26: 394489-394545 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCGGGCCGACCUGCUAGGGCCUGGUCUGUAGGCAGUGUAGUUAGCUGAUUGUUCUCCUGGCUGCAAUCACUAACCACACUACCAACACAACAGGUGACAAGAAGACACAGCCCUUC
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Structure
        10          20        30        40        50        
AUCGGGCCGACCUGCUAGG--|    GUC   A  C     A     C       UCUC 
                     GCCUG   UGU GG AGUGU GUUAG UGAUUGU    C
                     UGGAC   ACA CC UCACA CAAUC ACUAACG    U
CUUCCCGACACAGAAGAACAG^    AAC   A  A     C     -       UCGG 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-34-P2a_5p

mirBase accessionNone
Sequence
0- AGGCAGUGUAGUUAGCUGAUUGU -23
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Star sequence

Loc-Mir-34-P2a_3p*

mirBase accessionNone
Sequence
35- AAUCACUAACCACACUACCAAC -57
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