MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-34-P3d

Family name MIR-34 (all species)
Seed GGCAGUG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-34-P1  Loc-Mir-34-P2a  Loc-Mir-34-P2b  Loc-Mir-34-P3a  Loc-Mir-34-P3b  Loc-Mir-34-P3c 
Orthologues Aae-Mir-34  Aca-Mir-34-P3d  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3d  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cli-Mir-34-P3d  Cmi-Mir-34-P3d  Cpi-Mir-34-P3d  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gga-Mir-34-P3d  Gja-Mir-34-P3d  Gmo-Mir-34-P3d  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lch-Mir-34-P3d  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mal-Mir-34-P3d  Mdo-Mir-34-P3d  Mgi-Mir-34  Mom-Mir-34  Mun-Mir-34-P3d  Neu-Mir-34-P3d  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3d  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sha-Mir-34-P3d  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3d  Spu-Mir-34  Sto-Mir-34-P3d  Tca-Mir-34  Tgu-Mir-34-P3d  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3d1  Xla-Mir-34-P3d2  Xtr-Mir-34-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG2: 5773026-5773084 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAGACAGCAACAAACGUGUGUGAUGAUUAGGCAGUGUAUCAAUAGCUGGCUGUGAACUACAAAACAGCAGCUAUGUGCACUUCCACAUCAGUACAUGCCAUGCACGUUUUAUAAAAA
Get precursor sequence
Structure
        10          20        30        40        50        60
UAAAGACAGCAACAAAC--|      A    UA  C       CA       G  GUGAAC 
                   GUGUGUG UGAU  GG AGUGUAU  AUAGCUG CU      U
                   CGUACAU ACUA  CC UCACGUG  UAUCGAC GA      A
AAAAAUAUUUUGCACGUAC^      G    CA  U       --       -  CAAAAC 
       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +2 on the 5p arm and +1 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-34-P3d_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUCAAUAGCUGGCU -23
Get sequence
Star sequence

Loc-Mir-34-P3d_3p*
mirBase accessionNone
Sequence 
38- GCAGCUAUGUGCACUUCCACA -59
Get sequence