Mir-34-P3d

MirGeneDB ID

Cli-Mir-34-P3d

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-449d

Paralogues

Cli-Mir-34-P1 Cli-Mir-34-P2a Cli-Mir-34-P2b Cli-Mir-34-P3a Cli-Mir-34-P3b Cli-Mir-34-P3c

Orthologues

Aae-Mir-34 Aca-Mir-34-P3d Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3d Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cmi-Mir-34-P3d Cpi-Mir-34-P3d Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gga-Mir-34-P3d Gja-Mir-34-P3d Gmo-Mir-34-P3d Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lch-Mir-34-P3d Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3d Mal-Mir-34-P3d Mdo-Mir-34-P3d Mgi-Mir-34 Mom-Mir-34 Mun-Mir-34-P3d Neu-Mir-34-P3d Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pbv-Mir-34-P3d Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3d Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3d Spu-Mir-34 Sto-Mir-34-P3d Tca-Mir-34 Tgu-Mir-34-P3d Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3d1 Xla-Mir-34-P3d2 Xtr-Mir-34-P3d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold22: 2802157-2802215 [-]

Clustered miRNAs
(< 50kb from Mir-34-P3d)

Mir-34-P3d scaffold22: 2802157-2802215 [-]
Mir-34-P3c scaffold22: 2803153-2803209 [-]
Mir-34-P3b scaffold22: 2803312-2803372 [-]
Mir-34-P3a scaffold22: 2804282-2804344 [-]

Precursor
(pre-Mir +30nt flank)

AGGGUGAUCCUUGUGCUGUGUGUGGUGAUGAGGCAGUGUAUUGUUAGUUAGCUGUUCUUCAUACACCAGCAACUGACUACACUGCCACAUCAACACAUCACUGAGACAAGAAUAUAGGC

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Structure

        10         20         30        40        50        60
AGGGUGAUCCUUGUGCU-   -|   G     A         UU       A    UUCUU 
                  GUG UGUG UGAUG GGCAGUGUA  GUUAGUU GCUG     C
                  CAC ACAC ACUAC CCGUCACAU  CAGUCAA CGAC     A
CGGAUAUAAGAACAGAGU   U^   A     A         --       -    CACAU 
       110       100        90        80           70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-34-P3d_5p

mirBase accession

MIMAT0038641

Sequence

0- AGGCAGUGUAUUGUUAGUUAGCUG -24

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Star sequence

Cli-Mir-34-P3d_3p*

mirBase accession

MIMAT0038642

Sequence

38- GCAACUGACUACACUGCCACA -59

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