Mir-34-P3c

MirGeneDB ID

Cli-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-449a

Paralogues

Cli-Mir-34-P1 Cli-Mir-34-P2a Cli-Mir-34-P2b Cli-Mir-34-P3a Cli-Mir-34-P3b Cli-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold22: 2803153-2803209 [-]

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3d scaffold22: 2802157-2802215 [-]
Mir-34-P3c scaffold22: 2803153-2803209 [-]
Mir-34-P3b scaffold22: 2803312-2803372 [-]
Mir-34-P3a scaffold22: 2804282-2804344 [-]

Precursor
(pre-Mir +30nt flank)

GUGCAGGUGGUGCAUCUGUGUGGGAUGGGAUGGCAGUGUGUGUUAGCUGGUUGAAAUUCUGACAUCAGCUAACAUGCAGUUGCUAUCCUUUUCCACAUACCUUGAUCAUCGAAGUGG

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Structure

        10          20        30         40        50       
GUGCAGGUGGUGCAUCU--        U          -|              UGAAA 
                   GUGUGGGA GGGAUGGCAG UGUGUGUUAGCUGGU     U
                   UACACCUU UCCUAUCGUU ACGUACAAUCGACUA     U
GGUGAAGCUACUAGUUCCA        U          G^              CAGUC 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-34-P3c_5p

mirBase accession

MIMAT0038636

Sequence

0- UGGCAGUGUGUGUUAGCUGGU -21

Get sequence

Star sequence

Cli-Mir-34-P3c_3p* (predicted)

mirBase accession

None

Sequence

35- CAGCUAACAUGCAGUUGCUAUC -57

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