MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-34-P1  Loc-Mir-34-P2a  Loc-Mir-34-P2b  Loc-Mir-34-P3a  Loc-Mir-34-P3b  Loc-Mir-34-P3d 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Hsa-Mir-34-P3c  Isc-Mir-34  Lgi-Mir-34  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mml-Mir-34-P3c  Mmu-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ovu-Mir-34  Pbv-Mir-34-P3c  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3c  Sha-Mir-34-P3c  Sko-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Xbo-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG2: 5772554-5772612 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUCUUACCAGUGAUCGUGAGUGGCUGGGAGGCAGUGAAAUGUUAGCUGGUUUAAUUGAUUUCACCAGCUUACUUUUUUACUGCCCUCUUGCUGCCCAUACUCCAACCAUUGUGGUUU
Get precursor sequence
Structure
        10          20        30        40         50        
AAAUCUUACCAGUGAUC--   A UG  U  GA          U-| U       UUAAU 
                   GUG G  GC GG  GGCAGUGAAA  GU AGCUGGU     U
                   UAC C  CG UC  CCGUCAUUUU  CA UCGACCA     G
UUUGGUGUUACCAACCUCA   C GU  U  UC          UU^ U       CUUUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-34-P3c_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGAAAUGUUAGCUGGU -22
Get sequence
Star sequence

Loc-Mir-34-P3c_3p*
mirBase accessionNone
Sequence 
36- CAGCUUACUUUUUUACUGCCCUC -59
Get sequence