MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-34-P3c

Family name MIR-34 (all species)
Seed GGCAGUG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-449a
Paralogues Mmu-Mir-34-P1  Mmu-Mir-34-P2a  Mmu-Mir-34-P2b  Mmu-Mir-34-P3a  Mmu-Mir-34-P3b 
Orthologues Aae-Mir-34  Aca-Mir-34-P3c  Ami-Mir-34-P3c  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3c  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3c  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3c  Cmi-Mir-34-P3c  Cpi-Mir-34-P3c  Cpo-Mir-34-P3c  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3c  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3c  Gga-Mir-34-P3c  Gja-Mir-34-P3c  Gmo-Mir-34-P3c  Hsa-Mir-34-P3c  Isc-Mir-34  Lgi-Mir-34  Loc-Mir-34-P3c  Mal-Mir-34-P3c  Mdo-Mir-34-P3c  Mml-Mir-34-P3c  Npo-Mir-34  Oan-Mir-34-P3c  Obi-Mir-34  Ocu-Mir-34-P3c  Ovu-Mir-34  Pbv-Mir-34-P3c  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3c  Sha-Mir-34-P3c  Sko-Mir-34  Spt-Mir-34-P3c  Spu-Mir-34  Sto-Mir-34-P3c  Tca-Mir-34  Tgu-Mir-34-P3c  Tni-Mir-34-P3c  Xbo-Mir-34  Xla-Mir-34-P3c1  Xla-Mir-34-P3c2  Xtr-Mir-34-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(mm10)		 chr13: 113037549-113037610 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P3c)		 Mir-34-P3a chr13: 113036008-113036070 [+] UCSC Ensembl
Mir-34-P3b chr13: 113037429-113037487 [+] UCSC Ensembl
Mir-34-P3c chr13: 113037549-113037610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGCGCUGUCUUGCCUGUGUGUGAUGGCUUGGCAGUGUAUUGUUAGCUGGUUGAGUAUGUGAGCGGCACCAGCUAACAUGCGACUGCUCUCCUAUUGCACACACAAUCACCACCAGCAUGC
Get precursor sequence
Structure
        10          20        30         40        50        60
GGUGCGCUGUCUUGCCU--     UG    CUU      -|   U          UGAGUAU 
                   GUGUG  AUGG   GGCAGU GUAU GUUAGCUGGU       G
                   CACAC  UAUC   UCGUCA CGUA CAAUCGACCA       U
CGUACGACCACCACUAACA     GU    CUC      G^   -          CGGCGAG 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Mmu-Mir-34-P3c_5p
mirBase accessionMIMAT0001542
Sequence 
0- UGGCAGUGUAUUGUUAGCUGGU -22
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Proposed targets microrna.org: MIMAT0001542
TargetScanVert: mmu-miR-449a-5p
miRDB: MIMAT0001542
Star sequence

Mmu-Mir-34-P3c_3p*
mirBase accessionMIMAT0017180
Sequence 
40- CAGCUAACAUGCGACUGCUCUC -62
Get sequence
Proposed targets TargetScanVert: mmu-miR-449a-3p
miRDB: MIMAT0017180