Mir-34-P3c

MirGeneDB ID

Rno-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-449a

Paralogues

Rno-Mir-34-P1 Rno-Mir-34-P2a Rno-Mir-34-P2b Rno-Mir-34-P3a Rno-Mir-34-P3b

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr2: 44897616-44897677 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3a chr2: 44896085-44896147 [+] UCSC Ensembl
Mir-34-P3c chr2: 44897616-44897677 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAAUGAAGUUUUAGCUGUGUGCGAUGGGUUGGCAGUGUAUUGUUAGCUGGUUGAGUAUGUAAAAGGCACCAGCUAACAUGCAACUGCUCUCCUAUUGCACAUACAAUCAACAGCAGGAUGC

Get precursor sequence

Structure

        10          20        30         40        50        60
UUAAUGAAGUUUUAGCU--            UU     -|    U          UGAGUAU 
                   GUGUGCGAUGGG  GGCAG UGUAU GUUAGCUGGU       G
                   UACACGUUAUCC  UCGUC ACGUA CAAUCGACCA       U
CGUAGGACGACAACUAACA            UC     A^    -          CGGAAAA 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-34-P3c_5p

mirBase accession

MIMAT0001543

Sequence

0- UGGCAGUGUAUUGUUAGCUGGU -22

Get sequence

Proposed targets

microrna.org: MIMAT0001543
TargetScanVert: rno-miR-449a-5p
miRDB: MIMAT0001543

Star sequence

Rno-Mir-34-P3c_3p*

mirBase accession

MIMAT0017181

Sequence

40- CAGCUAACAUGCAACUGCUCUC -62

Get sequence

Proposed targets

TargetScanVert: rno-miR-449a-3p
miRDB: MIMAT0017181