Mir-34-P3c

MirGeneDB ID

Cfa-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-449a

Paralogues

Cfa-Mir-34-P1 Cfa-Mir-34-P2a Cfa-Mir-34-P2b Cfa-Mir-34-P3b

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3c Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr2: 42541963-42542024 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3c chr2: 42541963-42542024 [-] UCSC Ensembl
Mir-34-P3b chr2: 42542085-42542145 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCUGCACUACUUACCCGUGUGUGAUGGGUUGGCAGUGUAUUGUUAGCUGGUUGAAUAUAUGAAUGGCAUCAGCUAACAUGCAACUGCUAUCUUAUUGCAUAUACAAUGAACAUCAGUGUAU

Get precursor sequence

Structure

        10          20        30         40        50        60
GGCUGCACUACUUACCC--     UG     U      -|    U          UGAAUAU 
                   GUGUG  AUGGG UGGCAG UGUAU GUUAGCUGGU       A
                   UAUAC  UAUUC AUCGUC ACGUA CAAUCGACUA       U
UAUGUGACUACAAGUAACA     GU     U      A^    -          CGGUAAG 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-34-P3c_5p

mirBase accession

MIMAT0001544

Sequence

0- UGGCAGUGUAUUGUUAGCUGGU -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-449a
miRDB: MIMAT0001544

Star sequence

Cfa-Mir-34-P3c_3p*

mirBase accession

None

Sequence

40- CAGCUAACAUGCAACUGCUAUC -62

Get sequence