Mir-34-P3c

MirGeneDB ID

Mdo-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-449a

Paralogues

Mdo-Mir-34-P1 Mdo-Mir-34-P2a Mdo-Mir-34-P2b Mdo-Mir-34-P3b Mdo-Mir-34-P3d

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cgi-Mir-34 Cin-Mir-34 Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Hsa-Mir-34-P3c Isc-Mir-34 Lgi-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mml-Mir-34-P3c Mmu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ovu-Mir-34 Pbv-Mir-34-P3c Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Rno-Mir-34-P3c Sha-Mir-34-P3c Sko-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Xbo-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(monDom5_add)

3: 17545614-17545674 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3d 3: 17544591-17544650 [-] UCSC Ensembl
Mir-34-P3c 3: 17545614-17545674 [-] UCSC Ensembl
Mir-34-P3b 3: 17545756-17545815 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAGCACUGCUUAUCUGCUUGUGAUGGGAUGGCAGUGUAUUGUUAGCUGGUUGACUAUCUGAACGUGCCAGCUAACAUGCAACUGCUAUCCCAUUGCAUUUCCCACGACACAGACAAAUA

Get precursor sequence

Structure

        10        20          30         40        50          
AAAAGCACUGCUUAUCUGCU--  UG            -|    U          UGACUAU 
                      UG  AUGGGAUGGCAG UGUAU GUUAGCUGGU       \
                      AC  UACCCUAUCGUC ACGUA CAAUCGACCG       C
AUAAACAGACACAGCACCCUUU  GU            A^    -          UGCAAGU 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-34-P3c_5p

mirBase accession

MIMAT0004140

Sequence

0- UGGCAGUGUAUUGUUAGCUGGU -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-449a-5p

Star sequence

Mdo-Mir-34-P3c_3p*

mirBase accession

MIMAT0026685

Sequence

39- CAGCUAACAUGCAACUGCUAUC -61

Get sequence

Proposed targets

TargetScanVert: mdo-miR-449a-3p