Mir-34-P3c

MirGeneDB ID

Eca-Mir-34-P3c

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-449a

Paralogues

Eca-Mir-34-P1 Eca-Mir-34-P2a Eca-Mir-34-P2b Eca-Mir-34-P3b

Orthologues

Aae-Mir-34 Aca-Mir-34-P3c Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3c Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3c Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3c Cin-Mir-34 Cja-Mir-34-P3c Cli-Mir-34-P3c Cmi-Mir-34-P3c Cpi-Mir-34-P3c Cpo-Mir-34-P3c Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3c Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3c Gga-Mir-34-P3c Gja-Mir-34-P3c Gmo-Mir-34-P3c Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3c Isc-Mir-34 Laf-Mir-34-P3c Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3c Mal-Mir-34-P3c Mdo-Mir-34-P3c Mgi-Mir-34 Mml-Mir-34-P3c Mmr-Mir-34-P3c Mmu-Mir-34-P3c Mom-Mir-34 Neu-Mir-34-P3c Npo-Mir-34 Oan-Mir-34-P3c Obi-Mir-34 Ocu-Mir-34-P3c Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3c Pau-Mir-34 Pbv-Mir-34-P3c Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3c Rph-Mir-34 Sha-Mir-34-P3c Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3c Spu-Mir-34 Sto-Mir-34-P3c Tca-Mir-34 Tgu-Mir-34-P3c Tni-Mir-34-P3c Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3c1 Xla-Mir-34-P3c2 Xtr-Mir-34-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009168.1: 17771326-17771387 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3c)

Mir-34-P3b CM009168.1: 17771205-17771266 [+] UCSC Ensembl
Mir-34-P3c CM009168.1: 17771326-17771387 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGUGCAUUCGUUACCUGUGUGUGAUGGGUUGGCAGUGUAUUGUUAGCUGGUUGAAUAUAUGAAUGGCAUCAGCUAACAAGCAACUGCUAUCUUAUUGCAUAUACAAUAAACAUCAGAGUAU

Get precursor sequence

Structure

        10          20        30        40        50        60
AAGUGCAUUCGUUACCU--|    UG     U       GUA            UGAAUAU 
                   GUGUG  AUGGG UGGCAGU   UUGUUAGCUGGU       A
                   UAUAC  UAUUC AUCGUCA   AACAAUCGACUA       U
UAUGAGACUACAAAUAACA^    GU     U       ACG            CGGUAAG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-34-P3c_5p

mirBase accession

MIMAT0013102

Sequence

0- UGGCAGUGUAUUGUUAGCUGGU -22

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Star sequence

Eca-Mir-34-P3c_3p*

mirBase accession

None

Sequence

40- CAGCUAACAAGCAACUGCUAUC -62

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