Mir-34-P3b

MirGeneDB ID

Eca-Mir-34-P3b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-449b

Paralogues

Eca-Mir-34-P1 Eca-Mir-34-P2a Eca-Mir-34-P2b Eca-Mir-34-P3c

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2 Xtr-Mir-34-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009168.1: 17771205-17771266 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3b CM009168.1: 17771205-17771266 [+] UCSC Ensembl
Mir-34-P3c CM009168.1: 17771326-17771387 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGUGGAAAGCAGCAGUGACCUGAGUCAGGUAGGCAGUGUGUUGUUAGCUGGCUGCUUUAGGUCAAUUCAGCAGCCACAACUACCCUGCCACUUGCUUCUGGAUAAAUUCUUCUCAUUAACAA

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Structure

        10           20        30         40        50        60  
CGUGGAAAGCAGCAGUGA---| U   U     A     U  -     UAGCU      UUUAGG 
                     CC GAG CAGGU GGCAG GU GUUGU     GGCUGC      U
                     GG CUU GUUCA CCGUC CA CAACA     CCGACG      C
AACAAUUACUCUUCUUAAAUA^ U   C     -     C  U     -----      ACUUAA 
120       110       100        90         80             70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-34-P3b_5p

mirBase accession

MIMAT0034490

Sequence

0- AGGCAGUGUGUUGUUAGCUGGCUGC -25

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Star sequence

Eca-Mir-34-P3b_3p*

mirBase accession

None

Sequence

41- AGCCACAACUACCCUGCCACU -62

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