Mir-34-P3b

MirGeneDB ID

Xtr-Mir-34-P3b

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-449b

Paralogues

Xtr-Mir-34-P1 Xtr-Mir-34-P2a1 Xtr-Mir-34-P2a2 Xtr-Mir-34-P2b1 Xtr-Mir-34-P2b2 Xtr-Mir-34-P3a Xtr-Mir-34-P3c Xtr-Mir-34-P3d

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Ami-Mir-34-P3b Asu-Mir-34 Bge-Mir-34 Bta-Mir-34-P3b Cbr-Mir-34 Cel-Mir-34 Cfa-Mir-34-P3b Cin-Mir-34 Cja-Mir-34-P3b Cli-Mir-34-P3b Cmi-Mir-34-P3b Cpi-Mir-34-P3b Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dno-Mir-34-P3b Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Eca-Mir-34-P3b Efe-Mir-34 Esc-Mir-34 Ete-Mir-34-P3b Gga-Mir-34-P3b Gja-Mir-34-P3b Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Hsa-Mir-34-P3b Isc-Mir-34 Laf-Mir-34-P3b Lch-Mir-34-P3b Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Loc-Mir-34-P3b Mdo-Mir-34-P3b Mgi-Mir-34 Mml-Mir-34-P3b Mmr-Mir-34-P3b Mmu-Mir-34-P3b Mom-Mir-34 Neu-Mir-34-P3b Npo-Mir-34 Oan-Mir-34-P3b Obi-Mir-34 Ocu-Mir-34-P3b Ofu-Mir-34 Ovu-Mir-34 Pab-Mir-34-P3b Pau-Mir-34 Pbv-Mir-34-P3b Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pma-Mir-34-P3 Pmi-Mir-34 Pve-Mir-34 Rno-Mir-34-P3b Rph-Mir-34 Sha-Mir-34-P3b Sko-Mir-34 Snu-Mir-34 Spt-Mir-34-P3b Spu-Mir-34 Sto-Mir-34-P3b Tca-Mir-34 Tur-Mir-34 War-Mir-34 Xla-Mir-34-P3b1 Xla-Mir-34-P3b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr1: 178899740-178899801 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P3b)

Mir-34-P3a chr1: 178899500-178899564 [+] UCSC Ensembl
Mir-34-P3b chr1: 178899740-178899801 [+] UCSC Ensembl
Mir-34-P3c chr1: 178899884-178899944 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAGUGCAGAGCUCAUUACCUGCUUUGGGUAGGCAGUGUAGUUUUAGCUGGCUGCUUGCUAUUAACUCCAGCAGUCGCUAAUACUCUGCCACCGGCAGCAGGGAAAGGCAUCAGCCACUGCA

Get precursor sequence

Structure

        10          20        30        40        50        60   
UGAGUGCAGAGCUCAUUA--|     UUG   A     U   GUU     U    GCUUGCUAU 
                    CCUGCU   GGU GGCAG GUA   UUAGC GGCU         \
                    GGACGA   CCA CCGUC CAU   AAUCG CUGA         U
ACGUCACCGACUACGGAAAG^     CGG   -     U   ---     -    CGACCUCAA 
120       110       100         90           80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-34-P3b_5p

mirBase accession

MIMAT0022745

Sequence

0- AGGCAGUGUAGUUUUAGCUGGCU -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-449b-5p

Star sequence

Xtr-Mir-34-P3b_3p*

mirBase accession

MIMAT0022746

Sequence

41- CAGUCGCUAAUACUCUGCCAC -62

Get sequence

Proposed targets

TargetScanVert: xtr-miR-449b-3p