MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-449b
Paralogues Pbv-Mir-34-P1  Pbv-Mir-34-P2a  Pbv-Mir-34-P2b  Pbv-Mir-34-P3a  Pbv-Mir-34-P3c  Pbv-Mir-34-P3d 
Orthologues Aae-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cgi-Mir-34  Cin-Mir-34  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Hsa-Mir-34-P3b  Isc-Mir-34  Lch-Mir-34-P3b  Lgi-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mml-Mir-34-P3b  Mmu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ovu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Rno-Mir-34-P3b  Sha-Mir-34-P3b  Sko-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Xbo-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953060.1: 286014-286074 [-]
Clustered miRNAs
(< 50kb from Mir-34-P3b)
Mir-34-P3d KE953060.1: 284984-285043 [-]
Mir-34-P3c KE953060.1: 285891-285952 [-]
Mir-34-P3b KE953060.1: 286014-286074 [-]
Mir-34-P3a KE953060.1: 287069-287134 [-]
Precursor
(pre-Mir +30nt flank)
UCCUCUGGUGUGAUGCAACCUGUGACUGAUAGGCAGUGUAGAAUUAGCUGGCUGCUUUGUUUAAUUCUAGCAGUCGCUACCACACUGCUAUCUGCUGCAGGAACUCUUGGUUGUCAGAGAG
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Structure
        10          20        30        40        50        60  
UCCUCUGGUGUGAUGCAA--|     ACU     G      AGAAU    U       UUGUU 
                    CCUGUG   GAUAG CAGUGU     UAGC GGCUGCU     U
                    GGACGU   CUAUC GUCACA     AUCG CUGACGA     A
GAGAGACUGUUGGUUCUCAA^     CGU     -      CC---    -       UCUUA 
 .       110       100        90         80            70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Pbv-Mir-34-P3b_5p

mirBase accessionMIMAT0039052
Sequence
0- AGGCAGUGUAGAAUUAGCUGGCUGCU -26
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Star sequence

Pbv-Mir-34-P3b_3p* (predicted)

mirBase accessionMIMAT0039053
Sequence
40- CAGUCGCUACCACACUGCUAU -61
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