MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-34-P3b

Family name MIR-34 (all species)
Seed GGCAGUG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-34-P1  Pab-Mir-34-P2a  Pab-Mir-34-P2b  Pab-Mir-34-P3a  Pab-Mir-34-P3c 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Ami-Mir-34-P3b  Asu-Mir-34  Bge-Mir-34  Bta-Mir-34-P3b  Cbr-Mir-34  Cel-Mir-34  Cfa-Mir-34-P3b  Cin-Mir-34  Cja-Mir-34-P3b  Cli-Mir-34-P3b  Cmi-Mir-34-P3b  Cpi-Mir-34-P3b  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dno-Mir-34-P3b  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Eca-Mir-34-P3b  Efe-Mir-34  Esc-Mir-34  Ete-Mir-34-P3b  Gga-Mir-34-P3b  Gja-Mir-34-P3b  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Hsa-Mir-34-P3b  Isc-Mir-34  Laf-Mir-34-P3b  Lch-Mir-34-P3b  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Loc-Mir-34-P3b  Mdo-Mir-34-P3b  Mgi-Mir-34  Mml-Mir-34-P3b  Mmr-Mir-34-P3b  Mmu-Mir-34-P3b  Mom-Mir-34  Neu-Mir-34-P3b  Npo-Mir-34  Oan-Mir-34-P3b  Obi-Mir-34  Ocu-Mir-34-P3b  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pbv-Mir-34-P3b  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pma-Mir-34-P3  Pmi-Mir-34  Pve-Mir-34  Rno-Mir-34-P3b  Rph-Mir-34  Sha-Mir-34-P3b  Sko-Mir-34  Snu-Mir-34  Spt-Mir-34-P3b  Spu-Mir-34  Sto-Mir-34-P3b  Tca-Mir-34  Tur-Mir-34  War-Mir-34  Xla-Mir-34-P3b1  Xla-Mir-34-P3b2  Xtr-Mir-34-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054683.2: 64272852-64272911 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACGAGAAUCGGCAGUGACCUGAAUCAGGUAGGCAGUGUAUUGUUAGCUGGCUGCUUUGGUCAAGUCAGCAGCCACAACUACCCUGCCACUUGCUUCUGGAUAAAUUCUUCUUGUCAAUG
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Structure
        10          20        30        40         50        60  
CACGAGAAUCGGCAGUGA--| U   U     A     U   -    UAGCU       UUGGU 
                    CC GAA CAGGU GGCAG GUA UUGU     GGCUGCU     \
                    GG CUU GUUCA CCGUC CAU AACA     CCGACGA     C
GUAACUGUUCUUCUUAAAUA^ U   C     -     C   C    -----       CUGAA 
.       110       100        90         80             70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Pab-Mir-34-P3b_5p
mirBase accessionNone
Sequence 
0- AGGCAGUGUAUUGUUAGCUGGCUGCU -26
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Star sequence

Pab-Mir-34-P3b_3p* (predicted)
mirBase accessionNone
Sequence 
39- CAGCCACAACUACCCUGCCAC -60
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